Deliverables
Deliverables list (full duration of project)
|
Deliverable title |
Delivery |
Nature |
Dissemination |
WP 1 |
Quality Metrics and Ontologies |
|
|
|
D1.1 |
Microarray Portal - website |
3 |
PP |
|
D1.2 |
Feature/Gene based quantitative quality metrics |
8 |
PP |
|
D1.3 |
Whole array based quality metrics |
8 |
PP |
|
D1.4 |
A description of "best practices" for microarray studies |
12 |
PU |
|
D1.5 |
Prototype software encoding those metrics. |
16 |
PU |
|
D1.6 |
A Normalisation and Transformation Ontology developed as part of the MGED Ontology |
24 |
PU |
|
D1.7 |
Workshop report (MGED) on QC development |
36 |
PU |
|
D1.8 |
QM software in BioConductor |
36 |
P |
PU |
WP 2 |
Standards |
|
|
|
D2.1 |
Report on global efforts in standards |
6 |
PU |
|
D2.2 |
Identification of standards eligible for ERM |
18 |
R |
PP |
D2.3 |
Report on global efforts in standards |
36 |
R |
PU |
WP 3 |
Organisation and dissemination |
|
|
|
D3.1 |
Workshop I: Organisation of the community |
4 |
O |
PU |
D3.2 |
Report on workshop I |
6 |
PU |
|
D3.3 |
Workshop II: The development of QA/QC, pilot |
9 |
O |
PU |
D3.4 |
Report on workshop II |
11 |
PU |
|
D3.5 |
Recommendations for using external standards for QC |
12 |
R |
PU |
D3.6 |
Workshop III: Ontology Workshop |
12 |
O |
PU |
D3.7 |
Report on workshop III |
14 |
PU |
|
D3.8 |
Workshop IV: Dissemination of QA/QC results |
18 |
O |
PU |
D3.9 |
Report on workshop IV |
20 |
PU |
|
D3.10 |
Workshop V: Certification of standards |
24 |
O |
PU |
D3.11 |
Report on workshop V |
26 |
R |
PU |
D3.12 |
Workshop VI: Implications for new technologies |
24 |
O |
PU |
D3.13 |
Report on workshop VI |
26 |
PU |
|
D3.14 |
Workshop VII: Data quality and Systems Biology |
30 |
O |
PU |
D3.15 |
Report on workshop VII |
32 |
PU |
|
D3.16 |
Workshop VIII: Dissemination to larger community |
36 |
O |
PU |
D3.17 |
Report on workshop VIII |
36 |
R |
PU |
WP 4 |
Data Quality and Systems Biology |
|
|
|
D4.1 |
Co-regulation networks with and without quality parameter filtering, recommendations to WP1 |
16 |
R |
PU |
D4.2 |
Co-regulation networks before and after QA/QC |
36 |
R |
PU |
WP 5 |
Standards and European legislation |
|
|
|
D5.1 |
Survey of current efforts to obtain government approval for QA/QC |
12 |
R |
PU |
D5.2 |
Identification of candidate ERM, and planning of development |
24 |
R |
PU |
WP 6 |
Implications for new technologies |
|
|
|
D6.1 |
Survey of the field |
14 |
PU |
|
D6.2 |
Publicly available web-based information system (database) for emerging microarray-based technologies |
24 |
R |
PU |
WP 7 |
Management |
|
|
|
D7.1 |
Report 18 months |
19 |
R |
CO |
D7.2 |
Report 36 months |
37 |
R |
CO |